Scaffold Ga0207684_10000006

Overview

Basic Information

• Taxon OID: 3300025910
• Scaffold ID: Ga0207684_10000006
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 688605
• Total Scaffold Genes: 687
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 435 (63.32%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000443	Metagenome / Metatranscriptome	1132	Y
F002065	Metagenome / Metatranscriptome	597	Y
F004016	Metagenome / Metatranscriptome	457	N
F011454	Metagenome / Metatranscriptome	291	Y
F032208	Metagenome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207684_100000062	F004016	GGAG	MGAAVRFCAMDPNAAATWRDLYIGTVGAGASLTGLTFVAIALDPHQIERTPLLRLRAASALWCFVTVMFIGLAVLTPRPFTSVASVAVGVGGISGAVLLSVRTIRQRIFRQPHPGATVFRAAGNVFGFVLAGVGGLSLIDVEQGWVFATLAAACVIMLSSGIFASWLLVLQIGVPSGEKP
Ga0207684_1000000627	F002065	GGAGG	VAKWNPLALKLVMWLMGILIAAGSAAGFIGGSFFAFDQNFGVTASVAGIAFGAGLMIAGFDPIANVSWVRALIIYAILQVVYQLFAWISIGRFDLWPFVIAIVAGAVLVVLYPNKPELWMAGTMKMPSGMGGGMARSKM
Ga0207684_10000006377	F011454	GAG	MIRNTVESWRPQRGPDWSGVLIRLANSGPPPWLLYTAASAALVVILLVAFLVGSALQIGALGPQPVPSNLH
Ga0207684_10000006453	F000443	N/A	MGGVGPSIAWLKVDVLTAYQRITAEMQVHGRLRDTMNDPESLFHLRNVSAEPLMPGAVPLNGVPEGTFNKLAVCGIRTIDAEPPLPDQPEVIRRFVMFQGTSFMVTGAAEFPKLSDPKMHAEVLMKSRFFPMVDVTVVVIGTAGKSWTQPAIWINRDLMMALYLG
Ga0207684_10000006574	F032208	N/A	MLRVAGIVALIVLAACNEPSAKPSPSPTPIVAQASWTQNLTFAGELSGHMSGIVPDVGVQKSQCTGGRTHNGETWADIFYGTVDVSGDVWGVVFQINNFRGPGTYQNSSVTVEVHNADATKVWQSRGSDKITFVLDRSQQSGTVDAMLTNATTGKDGLQVTGRWNCRQ