Scaffold Ga0207684_10000005

Overview

Basic Information

• Taxon OID: 3300025910
• Scaffold ID: Ga0207684_10000005
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 736617
• Total Scaffold Genes: 766
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 508 (66.32%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004399	Metagenome / Metatranscriptome	440	Y
F007516	Metagenome / Metatranscriptome	349	Y
F011415	Metagenome / Metatranscriptome	291	N
F013122	Metagenome / Metatranscriptome	274	Y
F013549	Metagenome / Metatranscriptome	270	Y
F042813	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207684_1000000513	F042813	N/A	MRPAVVRWLKVVLLWQVVVVAASAGYVAVLGSQHPRGIAWIAPAIAAIFGTAIPLQVTVVAILRASRGS
Ga0207684_10000005199	F004399	GGAG	MAKGRNKQGREVKKKKKAKGAAGQAPADLQFRHHAVVTSAPEPAPKPPE
Ga0207684_10000005470	F013122	AGGA	MPAKKDFQLEADSGAREWLEGHPSAGPWVIAYDVHRCCGGGKICQVKVRELSRKDNPEGFASGVLGDGTRFLIDRRAAARRPTRFGLTVRGIGPLKHLDLSLEGEQWGTLLYD
Ga0207684_10000005680	F007516	AGGAGG	MYRRINPTSRQQLPMRMLFQPLGNGTFLKACEADSFRGLVGAMLDDPAYESGDVETRLLNRLRLADELVLLARIDNQPSVLIGDKDADQTINVASDEPLIRSLDRLGLVSLEPTLSAGGTRT
Ga0207684_10000005696	F011415	AGG	MLTRPAGARGLHVREAVLGSWARTGLAAAIVVVILGGIAVLGATGRLGDLRYANIPVIHPWPPAGYFQNPFNPADRGDLVNASDAAKVKGDLVADGQVELRAYQTSDGSLLPGADTGNRLAKLRSALDQNHAAGVFEDFKNQLTTVRVGRLVDPNDSSVTWCVEEIGTSRITLTKAADGSVLQQFSISFDDKFWMKSVGGRYLITDAEVHSVTTSS
Ga0207684_10000005697	F013549	N/A	MRLWRHARLSLAALAVVALWPIAAYAEAPGGDGGTVNVGPVSNGPVVSQGSAGYDPTGINATAATRPSGSGTTPNSLPDYTYRPVPYNSVPAPIQNNNGTLSNPNVGLSLPACPAGQTGYFVYDSNGNSLGIVCVPNPTDSLLPPTTPEIALADQASSKQPWPTLVMGINPGTGLTGLPSWFWLGGGSAAMPDAAASSGPLTVRVRARLAGVSWEFGDGIGYDSIDLGQAYPAQSDVQHVYQTDTYRLSNGYTAAAVLRYLVTYSVNGGPWLTLGVKTKPYSQPYSVYQVQPEAIGAP