Scaffold Ga0207643_10630745

Overview

Basic Information

• Taxon OID: 3300025908
• Scaffold ID: Ga0207643_10630745
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 691
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001892	Metagenome	621	Y
F022579	Metagenome	213	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207643_106307451	F001892	N/A	AKGFFDQRPWGRVMSVDPSMDLEEGLLPLAGEDALHEYPWRTPFVEFITEHDEGLGASSDSSGFSPFRWENLLEEVGE
Ga0207643_106307452	F022579	GGTGG	VDVIDEDPARGWIPPGGQFCKEIGGIVVPSRDVMQFDPLEFVLDLAHLLVVRCHEGALAGRLLHDLIDDQFQVAVNVES