Scaffold Ga0207643_10002821

Overview

Basic Information

• Taxon OID: 3300025908
• Scaffold ID: Ga0207643_10002821
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9378
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003986	Metagenome / Metatranscriptome	458	Y
F017245	Metagenome / Metatranscriptome	242	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207643_100028211	F003986	GGCGG	MPEMQTEVRTGTFLAIPRVLERSAADVVHEAFDRLLSSDTAVTTAAEAKRLLADNAETEELTDAVQRFVAIATPVARIALRGARFTRIPWVLVASSAVSIGVTVRNGVRELQAIAALLVHRFEQDTGTRPDPALLQKLTLELYLRPRRTPDVSDLGLPLARLARRWIVSGAFGRNTRGKSEKALDAAERLDVSSFTRRAPGFARP
Ga0207643_100028213	F017245	GGAGG	MTVDKALVQDRELREHATARPWHQDGHGSRLRLVGPLPRSTVVVDPYAPNPQDAPLLLHRVNTYEELEAEIERLRAWLRDVRARLDLTQSRTHEADQDFESLARDLRAGISAALGDLRADARLTSVARTPRG