NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207699_10240367

Scaffold Ga0207699_10240367


Overview

Basic Information
Taxon OID3300025906 Open in IMG/M
Scaffold IDGa0207699_10240367 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1244
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.4774Long. (o)-85.451Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012153Metagenome / Metatranscriptome283Y
F024187Metagenome / Metatranscriptome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0207699_102403671F012153AGGMTNLLDGNASHNLSAVVTFKSRDLVMPKGVDGGEALAWASADELLALHVELASDAKAFWKDGFLLYTLWAMGDFCGMVPPGRRSSHYPYTRTGFYQFLRDHGSQIGPEEARRRIRVFRAYNRFGVTIIRMVEKAGINKAFTAIPYIQENTIRDVLQLCIKTPYHRLRSAL
Ga0207699_102403672F024187N/AMERTIVPRDAQKVQYKNYEIIMFPETDELSNIISDTIKVVFKRRLVDRVLRLWTEMARGQGFPSRDQIEPSKLGVDWRNCLVIAVQSPVQLSYLVAVGGNLSFAHCPADSLEGVLLSHVPQVLSERRCLMIEGRARLREVGILYRSALYPLA

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