NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207647_10097457

Scaffold Ga0207647_10097457


Overview

Basic Information
Taxon OID3300025904 Open in IMG/M
Scaffold IDGa0207647_10097457 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1749
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameKellogg Biological Station, Michigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037345Metagenome168Y
F065881Metagenome127N

Sequences

Protein IDFamilyRBSSequence
Ga0207647_100974571F037345GGTGGVAVIVLLGSTVTERALAQWRAEMLPGVRFGPPLKAGAALGVAYGKRMGRVPFAGPIGLAEVGLGGARASAGYFVAGPFASGIEVLGSALRTWGDPAQLEPNQTLAGGELRVSFFLVNVGVAVLSPVAGFPDDDRR
Ga0207647_100974573F065881GGAMRRLSLMAAIAFALPASAAAQACLGSVSFGTMPVRLGGGAFFGKDYTGYAVSLVAGKDNAAFGNIGVSRAYFDDYDDTDDELFAELGWQRAVGKRAQLCPIVGGSFGTGPDGDGYEVKSRVGSLGAALGMTLQPRPSVKFIPNGSLQFDYGAVDVTDQVSGKQTYSDTFGLIDLGLGITLFHDRFSMAPTVRFPFAADDNSVSYGISFSVGIALGR

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