Scaffold Ga0207647_10032894

Overview

Basic Information

• Taxon OID: 3300025904
• Scaffold ID: Ga0207647_10032894
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3326
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Kellogg Biological Station, Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033181	Metagenome	178	Y
F071531	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207647_100328943	F071531	AGGAG	MAKVIEFYVPAGFRKVVKVVPPQERGQVLEFAVAQKRSA
Ga0207647_100328945	F033181	AGGAG	MSFEAVWGFDPDKVIPAVGLPPSEIETDKFSYSAEEQRAARLPSDLHAQIYELRRMFRL