Scaffold Ga0207688_10016342

Overview

Basic Information

• Taxon OID: 3300025901
• Scaffold ID: Ga0207688_10016342
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4025
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Kellogg Biological Station, Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023919	Metagenome / Metatranscriptome	208	Y
F101619	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207688_100163423	F023919	GGCGG	MSEAQPRRLLVVANLTESTPQLLKEVERRAKGGCTVTLIVPPERHPDAPDWSPEDAKDLVQRAAHGRPVQVVDGGADAAATIAGIVTDGACDEILLCTPPEHHPHWHRHSLPAQIEKLGIPVTVIPPDASGWSYEHGFPDDWVRTEVGPLT
Ga0207688_100163424	F101619	AGGA	VGETRRRDPDTPAGESAAEPAKASAWQRFNAHSPRYRVALVGWIVSIFLIPASVLLHSPAATGVAIVLTWLAIHNLRRVDAGERRAQADADPADADPADAGPDAPAVR