Scaffold Ga0207688_10014103

Overview

Basic Information

• Taxon OID: 3300025901
• Scaffold ID: Ga0207688_10014103
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4346
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Kellogg Biological Station, Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036586	Metagenome	169	Y
F079697	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207688_100141032	F079697	N/A	MANGPAVDLQGFEVDRRSARKDGREVVALRCVDTGVNGFVVECDVYPVNGIRVEPLRPGPYAFATRAQANAFMDEAAKALTYLGCEL
Ga0207688_100141033	F036586	N/A	MASQLRLHVLLPLAFLGLIGAAFGVYTMGKAPGGGNDAGVPLVTTHPDKTKPKPAPQATDDWVKGLQAWCGGFQAQYLKIDEPQVLADYESVVGEYVELWDATQPAFIKLGLPPQKRDAALALRRNIDETASKMRWVFNRLQALDVAAIQNQLDELDALDSQRVALLRRLGAGTCLDERNKGVARLAIQQAPLLINSQLQRYGKVVVLFYEPGAAYDAIQTREARAGALLAHAGFVSVNVSKNREAGQLASEYNVLESPTVLVFTRGHNLKARLEGFYDRTSIVQAVKNA