Scaffold Ga0207710

Basic Information
Taxon OID	3300025900 Open in IMG/M
Scaffold ID	Ga0207710_10000001 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025900 Open in IMG/M

Scaffold ID

Ga0207710_10000001 Open in IMG/M

Source Dataset Name

Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	1797433
Total Scaffold Genes	1591 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1003 (63.04%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

1797433

Total Scaffold Genes

1591 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1003 (63.04%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	Michigan, USA
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Michigan, USA

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017329	Metagenome	241	Y
F073412	Metagenome	120	Y
F089339	Metagenome	109	Y
F090536	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207710_10000001163	F089339	GGAG	VNVAARTWNALSDEDRARYENKLSGLYGHAGDEAAYNALTVDKQEALQLISARLTASDLWQFVGSIVNVYGAGGVGMYFSPRGDLESELRRRREFTGRFARHHDNTGGFLEKGRKVASLHFLYIDPEKGERDWHVHLDLYGGWGSIVTALEHLYWERWRKFRPDWRVMKQWVD
Ga0207710_10000001326	F073412	GAG	MNILNQLETQPIPIDEEEKRRTQRLLIGMLCAVLVTGAVLGGYMLLRKRHERQVAAAAEAEVKKKAPKVEVFVDDALVNGKTTTLGGTVHNISTETLQNIAVELHLRRRVGSGVDTKVVAPEMTDLAPDARAHYSLQVATDDYITATFSRVVGGGDRAAVPFKALPGNPRPPMDAPPSKTIVVEKKSQGKGDEFINTPNNPGRVP
Ga0207710_1000000148	F017329	N/A	MGWLTDLFQDVPLSPELREKLAAVEAENDSLKTDNILLKDDLRQANAQVLRLEKRLDQYTHNPELDEIDVNILKEVALTSEPAASYLSAKLSIELGALDFRLEQLTETDYLSAWSIGGIERYSLRPKGRDYLIRHNLTS
Ga0207710_10000001729	F090536	GGA	MRPIHKALLAVVVLSAVVVVALLLYRRMGPLPTFTDRDIAGETTITSQWLEIGPAPALKPSGKQSLIILELEGDYTPDFQAQMLRFPDGSLGMPEVQLVDQEGHVFQLHFLMVHHRDRTGSNFMGGAGFGSSDLPTDRGYSKVRVRSDKPMKCSKIIWRG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207710_10000001

Overview

Ecosystem & Geography

Associated Families

Sequences