Scaffold Ga0207642_11085339

Overview

Basic Information

• Taxon OID: 3300025899
• Scaffold ID: Ga0207642_11085339
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 517
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009270	Metagenome	320	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207642_110853391	F009270	GGA	MVHLGEEAQVVAHFSPFGDSVSLMQDRCTVCTEHIIGSEII
Ga0207642_110853392	F009270	GGA	MVLLGDEAQVVARFGPFGDSVILMQDRCTVCTEDTIGSEIILDAPNGTSR
Ga0207642_110853393	F009270	GGA	MVLLGDEAQVVARFGPFGDSVILMQDTCTVCTEDTIGSEIILDAPDGTPR
Ga0207642_110853394	F009270	N/A	VGHVVARFSPFGYDVILMQDRCTVCTERTIGSEIILDAPDGTPR