NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0207692_10031805

Scaffold Ga0207692_10031805


Overview

Basic Information
Taxon OID3300025898 Open in IMG/M
Scaffold IDGa0207692_10031805 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2530
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.4774Long. (o)-85.451Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005836Metagenome / Metatranscriptome389Y
F085525Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0207692_100318053F005836GGAVNAPRLRLGYPRGSTRRAGLTLAGTVLFLAGLTGAAPARQAGDVIERLGPLTISATAPRPGPAGSLTMYIQVGTSGQTSDQLDAAIAADGAAVAVYHRRVNVGEISGLTGCGTELPPPGIVDHWLHYGPLLVPGRSGGPAPPAEATLTVPPDASLRTGATLAITLYFAQAGSVILRLPVSRA
Ga0207692_100318054F085525N/AGRERFVVVGNPNAKAAPIAPALRRFLSVQGRAGLSHPDASTWTAAEALSPIAWLTGKTIRLPAN

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.