Scaffold Ga0209425_10112073

Overview

Basic Information

• Taxon OID: 3300025897
• Scaffold ID: Ga0209425_10112073
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_05 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1595
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008882	Metagenome / Metatranscriptome	326	N
F013295	Metagenome	272	N
F032075	Metagenome / Metatranscriptome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209425_101120732	F013295	AGGAG	MKINDLTPKQFARREIIKYLRDLFDNPAKYITNFESYTHKQQEEILRFISLDEDRIDKLLNKPMGEEXVYLTYKRNPMFQPI
Ga0209425_101120734	F008882	GAGG	MSVTKYNFSKPKINRQELELLNWFLAHTNDNPLINPEALELFKANGYSAMNYQDLVNKIKTILKTYKTKGAKIXVLNIQN
Ga0209425_101120737	F032075	N/A	MSKLHHTKYRKNYKNYILDCIDSEDDLINQELTRDQKIQYLFDRFNSEYGWNIQRVGKYKAMEEWLSGLAINIPYTYFDIIELAKEMGSIDSNPSQALKDRVCENYFSFMAQMVLLLEDELLEVA