Scaffold Ga0209425_10065042

Overview

Basic Information

• Taxon OID: 3300025897
• Scaffold ID: Ga0209425_10065042
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_05 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2325
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011124	Metagenome / Metatranscriptome	295	Y
F016757	Metagenome / Metatranscriptome	245	Y
F032478	Metagenome / Metatranscriptome	180	N
F037204	Metagenome	168	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209425_100650421	F011124	AGGAG	MFDQDKSYSVLVWDMPVSVWDDDADDYIRNEDGSIKLFSLPNYDYSYICEGVDVDDLHERDEEDDCNE
Ga0209425_100650422	F016757	AGGAG	MPKYEVIVEATTQRDIIVDAVSEYEAWIKAQIEMRGLVGGENTQVISSKEIDNV
Ga0209425_100650424	F032478	GAGG	MYWEVGIKMDGISGVYDVHPQPLEQPIWNHAVEHALDMAQAMYPDKHIELEFVKEFDSV
Ga0209425_100650429	F037204	GGAG	MDVKIYKDLSMYDFAMDVYQKAMHMKHDHNVAHYDVQEIIDYLQFIHNMEKGNAN