Scaffold Ga0209425_10009598

Overview

Basic Information

• Taxon OID: 3300025897
• Scaffold ID: Ga0209425_10009598
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_05 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8709
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (52.63%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004438	Metagenome / Metatranscriptome	438	Y
F054888	Metagenome / Metatranscriptome	139	N
F069473	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209425_100095981	F004438	N/A	GLFATSCATVNSVIEGGKDIAMTTVDTTVKTAGSISGAALKDVSGVVNTVAETYEGVIDTVVENIDEQTDELQNKPEESK
Ga0209425_1000959810	F069473	N/A	MESLDMKTGIKNKRNKLTERTTTQAIWVDSEIHQLLKEHQVMSRSSRSLGELAAHYIKLGICDARSQKK
Ga0209425_1000959814	F054888	AGGAG	MDFFEENSGEGNGSNSYLKFLAKEKAWYIGENVYDMEYILLDPDTIQTGLGRYSGGYEFEFSDIPFSKVENKEGWKKAFSVWAFTSDKQVVQWERAAWGELQGFKSMCEKFWMQKAANEGQLPCFRYLGSRGVKFDSGFSSEVPEFEFVAWKPRPVEFAIPAWANDEDVPAPVADSPVEKTVVTDDDIPF