Scaffold Ga0209425_10007131

Overview

Basic Information

• Taxon OID: 3300025897
• Scaffold ID: Ga0209425_10007131
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_05 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10566
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009463	Metagenome / Metatranscriptome	317	Y
F013249	Metagenome / Metatranscriptome	273	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209425_1000713115	F009463	N/A	MEKVKLTDILEGDYSKNVNYTDDTAMYDPLHEDGDDQQGMLKYTTTIDGRKYKVSFDVNKNPTKKGIKVKFFPLDDNGTEIPNPSPEQLGQLQNDVATKLAPKFNDFRLEFDEDEDAPEKNVAAFQVPLSSFVSFVANVVFKK
Ga0209425_1000713116	F013249	N/A	MGKRKLLNLKVIGHSPKLLNEFINDNKFNIFKETFSGIKHAIRQNKNIAEICSVNTDVAVATIAKKDWENALSSSLGYFESNDEYEMCGDINYTLKML