Scaffold Ga0208916_10231205

Overview

Basic Information

• Taxon OID: 3300025896
• Scaffold ID: Ga0208916_10231205
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 802
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011753	Metagenome / Metatranscriptome	287	Y
F033721	Metagenome / Metatranscriptome	176	Y
F039994	Metagenome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208916_102312051	F033721	AGGA	MRWIKKELDEEGKPEWAVYIDQTGESNESEWSHFDTYKTRDDAVQACQRFTWE
Ga0208916_102312052	F039994	GGA	MDNPPTIEEMGNAASEIVWRVMGNGSAKSAYGEWFWKDRPTYDYHITRCIKHAVTAQQQIHLNHPNPDESGENALDHLERAVVRALFAWMQLKKGLPRL
Ga0208916_102312053	F011753	N/A	EKSLVGPGYAGRCDAYVRLRGIGDAIIDLKNRKINKKYNAAPWYPTDAQQLWAYRNASENPQCACVSVVLASNDPEYIKHHQWGEDELYQAGIAFCAMQKVWAWVKEYTPPGMKL