NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208916_10035929

Scaffold Ga0208916_10035929


Overview

Basic Information
Taxon OID3300025896 Open in IMG/M
Scaffold IDGa0208916_10035929 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2004
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000957Metagenome / Metatranscriptome821Y
F003714Metagenome / Metatranscriptome472Y
F005588Metagenome / Metatranscriptome395Y
F010765Metagenome / Metatranscriptome299Y

Sequences

Protein IDFamilyRBSSequence
Ga0208916_100359291F000957GAGMSNFKHLEGMRNLLAEIYEVNERIMTGDIISAKAAIASTNVKKILNHYHEALHEDGAVKVSLQAYVAAGGWVGIQYSYELDGF
Ga0208916_100359292F005588N/AMITIRPNKMPTLWWLFPWSYARTLHMSANAVKAYADRLDEQLDGQRQTIRHLLAENYMLQQRVADQNDAIIRGSAITPDAHPYRDETVHE
Ga0208916_100359294F003714N/AMPNAHHPYTDTVTFAGRPITLKRPMAEFAARRLQAILPQIAALNAAGKSQADAAEALGTTVCTLRTWLDLTGTTWVNLRRRGPYNISR
Ga0208916_100359297F010765N/APPQPEDLPVSVRDLGFGILIGSAAWLVRYLCSTEKHSLGYIFRRTATAGLTSLLVGIATKGYFSSEGMAFAAAGCAGYASPELVDLLLAKIKGMKGKTATKGD

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