Scaffold Ga0208916

Basic Information
Taxon OID	3300025896 Open in IMG/M
Scaffold ID	Ga0208916_10007518 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208916_10007518 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4262
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (86.67%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

4262

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (86.67%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002009	Metagenome / Metatranscriptome	604	Y
F003304	Metagenome	494	N
F011918	Metagenome / Metatranscriptome	285	Y
F020665	Metagenome / Metatranscriptome	222	Y
F021063	Metagenome / Metatranscriptome	220	N
F022371	Metagenome / Metatranscriptome	214	Y
F058800	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208916_1000751810	F003304	GGAGG	MKQALVTQSFGNEWQNIIDLTRPRMEAYCKRHSVDFILIDKPLTHPPQYSKSAIGNIMATKHYDQVTFVDADVLIAADCPNIAEDAGLFCAFDEGAFLDRKPEMVKLAGAFGGVIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLANQIKVDDAKLVELGR
Ga0208916_1000751811	F058800	AGGA	MKQALSQLFYFLGDTISRTILRAGFGYGLYKTFMLWSIELDEKFDVWKEVKPRRRKKK
Ga0208916_1000751814	F002009	AGGAG	VTAPTIQEMGNAAQEIVWRVMGKGSDKSAYGDWLEKDRPTHDYHIARAVRHLATAQMQLHKSSPCPDNNGETSIDHLERALVRCLFTLAQIKKEVTRL
Ga0208916_1000751815	F011918	N/A	DCAQIFAYLSASENPKAAGVSIVLASNDPSKIMTKVWDKDELYQAGIAFCAMQKVWAWVKGYTPPGMKL
Ga0208916_100075187	F020665	AGGA	MKKKNKKITLVKTSEQTAVRVIVDIDDDLYEALAKAGRHHLAKDKMACFEYALNKALLELCEELK
Ga0208916_100075188	F022371	AGGA	MLCLLDLGAIVWVIASFILYSSLLLSAIYCAGYIIFKLIEVIRKELDL
Ga0208916_100075189	F021063	GGAG	VRSTQLCRGDYDDRVQQLAGEVALQAIRDLRMLRKRGMVKGMKIVKDHTGVPLNDALEYKNSHEVQKLLRDFKTGVVSWWCRASGVQIDNRTLLRKLKENDYALPT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208916_10007518

Overview

Ecosystem & Geography

Associated Families

Sequences