Scaffold Ga0208916_10005229

Overview

Basic Information

• Taxon OID: 3300025896
• Scaffold ID: Ga0208916_10005229
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5138
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019102	Metagenome	231	Y
F035669	Metagenome	171	Y
F041645	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208916_100052292	F035669	N/A	MRENTLNELQGVSILTKEFFNKLIRRIESTKPLAGSGIAIKQEENGIVLSISGVGGGLGGYSAKTLNVCSNGVPTTITVLAK
Ga0208916_100052293	F041645	GGTGG	MASLVIGSAISTKVLQRQNFSKEPNGLETIIEAYAIQTANRDTVVPEKNTLHSAFSSSTKKYSRMAVESVATEEQDGGITQMLVTFVGLTTSTGLPPPIVRLIPTAGEGVYGPPLVIEAEYVTDVSETEFMAGQLAQNNGLQQASLFTQTIKMPAVINGTTMPKDPRQAFFSSGSGVIAQYGGYCVLSMSCERRGIFLVARNTYHEVQQIATVS
Ga0208916_100052296	F019102	N/A	MSISLEEELNSAFISPEKEFMGEKLAPYTEGSRLLLLQVRDDEDSSIYFIWSFIYVHILLAKNKKDAIKLCWNKNLFREKIMEYIEGKTEADREVATTIVSNILDEAQKGKVDVIPAPHQPDLGNA