 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025896 Open in IMG/M |
| Scaffold ID | Ga0208916_10004554 Open in IMG/M |
| Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5481 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (44.44%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Delaware Bay | |||||||
| Coordinates | Lat. (o) | 39.283 | Long. (o) | -75.3633 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F081046 | Metagenome | 114 | N |
| F086811 | Metagenome | 110 | N |
| F088509 | Metagenome | 109 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208916_100045546 | F081046 | GAG | MTAKTIKYSQRLGDIIRCLPACKYLADQGHEVFVDCLPPYHGIFEMVSYAKVGNKGDVIDLEIWPNKYQEYRFSGKTWTEFVYAHPEINKADPKDILFDKLDDAPAKGFPETYNMVAPFGISQGHKRDPLQIIVEARKKCGEKNFFVLCPPGMEIKGLPTYTAPNIPEMARAIRGAGEFWSIDSGQMAIAAGVRKESKVVYFPQTNEPFDKDNIFIWDSVELN |
| Ga0208916_100045548 | F088509 | N/A | MTSIERQLEESLATALAGVAGLNIFKSDTEGARLLPSLVIQVSIGSEEIIPYSGVFRCPATITYSTRADTTTRAELDSKFHEILQVMYQSPNLASVLTTATLKVFLANVTSESPEIKSENRTWSKSLSLDISCTSI |
| Ga0208916_100045549 | F086811 | N/A | MISPQFKIEDALAAILIPISGLNVFTSNRTGARLFPYVTIQASLGSQQIIPYSGVFEVSADIAYSDSATLTSQANFDATYFDIFQKLYSGNNTLVNKVQDKVTDLKIFMGRITSQSPTIRADKRAWQRGLSLSFIVTPDENADGFREYDFSDALNSFYLGTI |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |