NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208916_10003838

Scaffold Ga0208916_10003838


Overview

Basic Information
Taxon OID3300025896 Open in IMG/M
Scaffold IDGa0208916_10003838 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5977
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007164Metagenome / Metatranscriptome356Y
F010463Metagenome303N
F023585Metagenome209Y
F024265Metagenome206N
F033350Metagenome177N

Sequences

Protein IDFamilyRBSSequence
Ga0208916_100038381F033350GGAGMSIDVDVPKLKWSMLQWKTIEEKPKNDEKVLMDIGGEVCVGRYVDGSFVSRSWGHSENDVRLWASWPKAPKW
Ga0208916_1000383811F024265N/AMNEAYTTPEAKANGILADRYPGKELEKLYATTRNQATIDMLRDAVFTLITNEIPTCTIAEVLKKTHGAIQYHLRYLEGRGKIKRPNKRCHWTEVNRED
Ga0208916_1000383815F007164AGGAMSEKQIGMELQKTVRLLDKAKQNAIEQMGEAIGLAADAGDLLLSARVEGLDLDTIQEVAGINGEQARRYERVAKARPSLQAPSPSGLKQLALWTGLLPDPIETSNPKAEQAWHSYIIKARQWLARKSVTNWTSVQKADFVSEAEPIARAFVEAGGKLHQNG
Ga0208916_100038383F023585AGGAMSVKRLKLLEEFHAIVSKRLRDLFKDFDHSKRENYKDIINHLDYSHRITKELLERAKKYQKIDMEKAKK
Ga0208916_100038386F010463N/AMNHPQELVLAATIHRVKMCEDRIREFEQMVTTLTAQMAHNRAELASKGLANLVMGTATPLDIPKELVPTYGKYRARGNRTHSVVKKRWEIWKAQHESGLSLRDIANAWGCHPTSVLNAKNRNFKARKATGRNTK
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Biomedical Sciences Research Center "Alexander Fleming"
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