Scaffold Ga0208916

Basic Information
Taxon OID	3300025896 Open in IMG/M
Scaffold ID	Ga0208916_10003020 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208916_10003020 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6793
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (61.54%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

6793

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (61.54%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006138	Metagenome / Metatranscriptome	380	Y
F012433	Metagenome / Metatranscriptome	280	N
F014487	Metagenome / Metatranscriptome	262	Y
F026543	Metagenome	197	N
F026550	Metagenome	197	Y
F035669	Metagenome	171	Y
F041645	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208916_100030201	F026550	GAGG	MSQSLDIYIDTTNGNLVAAGSARNGTLPTLTRNDSYNLRVRLQERDSSGLLRDLDLTGSSIKLGIGGIDADPTDGQFKLVLNSVTSNAISFNATTTQLYNAISGIAGTGVGVTTYGNENYAYLITSATANT
Ga0208916_1000302011	F014487	N/A	MPILLLTLFLCSCSPKHTDNNALPLYSDMGAAEDAGKVK
Ga0208916_100030202	F035669	GAG	MRENQLNELQGVSILTKEFFNKLIRRIESTKPLAGSGIAIKQEENGIVLSISGVGGGLGGYSAKTLNVCSNGVPATITVLAR
Ga0208916_100030203	F041645	N/A	MAFSIIGSSIDSKVLQRQNFSKEPNGLETIIEAYAIQTANRDTVVPEKNTLHSAFSSSTKKYSRMAVESVATEEQDGGITSMLVTYVGLTTSTGLPPPIVRLIPTAGEGVYGPPLVIEAEYVTDVSETEFMAGQLAQNNGLQRVGFFNPTIKMPASINGVAMPRDPRSAFFSTPQSGFGGGVIVQYSGYCVLSKSCERRGLFLVARDTFHEVQQIATVT
Ga0208916_100030207	F026543	N/A	MTEAYWGTTNIKVASAVASFGAKPRSIDPVTRTIKEDGSTQATFWFEAGAGAEAKAEMERPWSEMKSDPESPIRYVRAALENRETFLGLLKRAVPVRVIQRGGQTLLISENATSEQRRAILKHL
Ga0208916_100030208	F006138	GAGG	MAAVTIGTAGLSFGLVSEAGIGLVQSFSEARNVEKNEVRNNSGDIVAIGYYNATTSYSLSVAITGAYNVTAGAALAALANATTLGTTRIDSITLNKSNDAFVTLDISATGYPNVS
Ga0208916_100030209	F012433	GGAG	MSADQVADLRERLARIEERQVNLIAVLERHTSEIAEWTGKMNGKVDTLERDAHTIKTKLWLVALVSGAVFSTIWELIKVRVFPR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208916_10003020

Overview

Ecosystem & Geography

Associated Families

Sequences