Scaffold Ga0208916_10002215

Overview

Basic Information

• Taxon OID: 3300025896
• Scaffold ID: Ga0208916_10002215
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8045
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005846	Metagenome	388	Y
F011284	Metagenome	292	N
F012113	Metagenome / Metatranscriptome	283	Y
F023585	Metagenome	209	Y
F023833	Metagenome	208	Y
F025739	Metagenome / Metatranscriptome	200	Y
F027777	Metagenome / Metatranscriptome	193	N
F101128	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208916_100022151	F101128	AGG	MRRDSFWFPFEPNRWLANEKLALVSLASKGLWIHLLCLMYKANAGGKLTINGHIPTPEQISRMVGQDAKPLLQELEVAGVYELKDGAIYHGGVA
Ga0208916_1000221513	F011284	AGCAG	MTLEQSVEKAQKHFTKKHELHLTTLQVAAVESMEKKYKRGVEEHGGTKLWEMPSVKLVENAIEEATDQLTYLLTLRSQMHIVLELAKDGCTDETLTNPRARECCNLIYTTLTGQTKPPL
Ga0208916_1000221515	F025739	GGTGG	VQRPARKETMKKLLINAVCVIRKSILGFTAASLICGCATTRPYDIGQTPHQDSISDFIMRWDKLDRQKASPQEYRELYAQTLKALSRSMEETERFRKRLDQ
Ga0208916_1000221516	F012113	N/A	MEQILTFVQSQDVFAWVGALVALLSAVIAIASLIPGDEPETTLRKVVDFLSKFSRK
Ga0208916_100022152	F023585	AGGA	MSVKRLKLLEEFHAIVSKRLRDLFKDFDHSKRENYKDIINHLDYSHRITKELLERAKKYQKIDMEKGKK
Ga0208916_100022154	F023833	AGGA	MKSHSDQLQDIINDAMSKAAALERERCAELVQKLADGTEDQVIQDILNEVVVALRRLG
Ga0208916_100022156	F027777	AGGA	MSEELPTFWYEEPAKKKLPNETTDEWVVRVFGAFPDTEFDQRNDFRCLNLPTTAKENAEGFGIFDYGQDKQ
Ga0208916_100022159	F005846	N/A	MTSFPLPARPVGSVVPASHNEFADNTAIEGKLNGWRGWFDQETQQGYNRHGKFATNHKLMAERILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPSNPKPYAERMKEIEHLEAVTFDVPQNKLLRFVRLAHHKINSIWEEMNFQNNKAGEVIWEGFVMKALDDGKYPFITNPNYCSPSWQKQRIRW