Scaffold Ga0208916_10002210

Overview

Basic Information

• Taxon OID: 3300025896
• Scaffold ID: Ga0208916_10002210
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8056
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003049	Metagenome	510	Y
F005584	Metagenome	395	Y
F008741	Metagenome	328	Y
F009142	Metagenome	322	Y
F030060	Metagenome	186	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208916_1000221010	F008741	GAG	MSVKTIKYSQRLGDVLRCLPAAKHLADQGHEVFFDCFDQYHGVFELTSYVKAGHRMDDVIDLEVWPNRYEEYRKSRRSWTDFVYSNPEIKDADKTNIVLDKLDDKPAEGLPETYNLVAPFGLSQGYYRNPLELIVRARQTMGKDNFYVLCPADIKIEGLNTYTAPSVEQMAKAIRGATDFWAINSTPIILASATRRDKQTGFFPQKNEWETDNIFSFDGLVSMD
Ga0208916_1000221011	F005584	AGGTGG	MAGSIPTSYFANDLSYMIEDLYQSVTGLGSSSVSASVTDLTTASELEIGGEVFRVTQSLVVLASGISAPVIGSLCTVSGVERMIGGFSQSTDGLSYTIELAEITT
Ga0208916_1000221013	F009142	N/A	MNNSVQINIEDALENLLSQIPNLNVYKTNRVGAKLFPFATISASVGGQLLGNYTGVYEVAVTIDYSDTAAKISQVDFDSEYCSIFETFYSETPPLFTKIQNNILDTKVYTARITGQTPTIRTAKRAWQRGLKMSLICTPSELDDGLRYLDFHEKRNSMYVGVI
Ga0208916_100022105	F003049	AGGA	MKNAKQIIGCRKSKKGENTAGLGVITFGKSSIDKTKYVLVDITYDEKAGKELYEAGMLALKHDPEAVIEYAIKKALAGMAKCKR
Ga0208916_100022108	F030060	N/A	MTKGIITSESPEIHWEHLNVAGGRVLDLGCAFWTESERQEANGTTKYFLSQKPEFYMGVDINQGDINTLSQQYPQGKFLCEKADSAFQMDTWITENSITHIKCDIEGDETQLLQIGNVHNLKKIAIELHYSDAWLKEFIDWFDSIGFECYRHDSVSFCAEISVIYGRLKC