Scaffold Ga0208916

Basic Information
Taxon OID	3300025896 Open in IMG/M
Scaffold ID	Ga0208916_10001411 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208916_10001411 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10334
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (32.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

10334

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (32.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001338	Metagenome / Metatranscriptome	719	Y
F001780	Metagenome / Metatranscriptome	635	Y
F002038	Metagenome / Metatranscriptome	600	Y
F003714	Metagenome / Metatranscriptome	472	Y
F006659	Metagenome / Metatranscriptome	367	Y
F042864	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208916_1000141111	F006659	N/A	MKKDTKPTSEYRIIADSSYIVLPDQKVARLLTPTVRNGVTYYNLFVPGYTRMSLQDIEATIKAGEVTKADAK
Ga0208916_1000141115	F002038	GGA	MTQPPAGIERIARTVQGQYALLLLLDGYPYVELTARKHADFLSDLGLWKRKTHPSLARSQVRFFTVDPIGTLKELTFNR
Ga0208916_1000141118	F001338	N/A	MTTENNDRPPLTSISTNGTYKLKLIKPKFEKVKVWEDGTTSARLFFVDDKGFCLSKNFSSKYGKALAMLVGKFSGKFTAEIRLDATPAEYLEYISPACGQTILVGVEVEANGEWQGKPQFKYKLTYPKGSAKPTVPDALPPEGVNF
Ga0208916_100014112	F042864	N/A	MTTPTKPKAVLVSDKAMVELLKRKAIAFRESANLKDKDGCVRGLGSYALYGIDHAKGQLVVLASEPTASDFNKYVTAKAKADVCALFDQVVEYRDAGSHSNPKVTILCWTLA
Ga0208916_1000141125	F001780	AGG	VTKASINDLSAPAKEAKSFDAWFFAQPKKVQEKMRESGVLPYREMVQSRHVFNIDPNHPSWATKDGDATRTEVDAFISRDHVGVMLKAFMDAIALSDCYAFRRHVETVRWALSLPGCLDSRTIATMYGRSHIWMQKRARQIRSSVNGDACGLFPHVNSRRDKHKMPRR
Ga0208916_100014113	F003714	N/A	MPNANHPYTDTVTFAGRPIPLKRPMASFAARRLEAILPQIAALNAAGKSQADAAEALGTTVCTLRKWLDITNTTWGNLKVRGPYNIKRHA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208916_10001411

Overview

Ecosystem & Geography

Associated Families

Sequences