Scaffold Ga0208916_10000884

Overview

Basic Information

• Taxon OID: 3300025896
• Scaffold ID: Ga0208916_10000884
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13376
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (63.64%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003049	Metagenome	510	Y
F008741	Metagenome	328	Y
F009142	Metagenome	322	Y
F012433	Metagenome / Metatranscriptome	280	N
F019102	Metagenome	231	Y
F025225	Metagenome	202	Y
F026543	Metagenome	197	N
F026550	Metagenome	197	Y
F030060	Metagenome	186	N
F035669	Metagenome	171	Y
F041645	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208916_1000088412	F009142	N/A	MSNSVQINVEDALEDLLVGISGLNVYKTNRVGGKLFPFATISASVGGQVLGNYTGVYEVAVTIDYSDTAAKVSQADFDAEYCSIFEAFYSETPPLFTKIQNNIVDTKVYTARITGQTPTIRTAKRAWQRGLKMSLICTPQ
Ga0208916_1000088414	F012433	GAGG	MSSDQIGELRERLARIEERQTNIISILERHTSELAQWSNKINTKVDTLERDAHTIKTKLWLVALVSGAVFSTIWELIKVRVFPR
Ga0208916_1000088416	F026543	N/A	MNEAYWGTTNIKVASAVASFGAKPRQLDPVTRTIKEDGSTQATFWFEAGAGAEARAEMERPWSEMKSDPESPIRYVRAALENRETFLGLLKRAVPVRVIQRGGQTLLISENATSEQRRAILKHL
Ga0208916_1000088417	F019102	N/A	MSISLEEELNSAFISPEKEFMGDKLAPYTEGSRLLLLQVRDDEDSSFYFIWSFIYVHILLAKNKKDAIKLAWNKNLFREKIMEYIEGKTEADREVATTIVSNILDEAQKGKVDVIPAPHQPDLGNA
Ga0208916_1000088418	F025225	AGG	MITVELLNQAKFVHKLQQYQQVSKKNMADVINQKLGDVAVTAIGTTYRTNAAQIASELQRVEGQVVTKKVFKPFGLTKSGKVKKRKIGEYAVGFKAKSVSYAGTYKLVNWLLKNRGLATLGKTKQGIGGLGMGNTPGTIGALARRLVAGRKRSINYIRNGWAAAASVFGKRASLTRGDYSQKAIQRLGGGTKADSKKSQMEGIIFNRAGDLDTRYYPVRKRPISGAVKVGVPGLKMAIDKVMKDMNVYLARKNKEASDKLKL
Ga0208916_1000088420	F041645	GGTGG	MASLVIGSAISTKVLQRQNFSKEPNGLETIIEAYAIQTANRDTVVPEKDTLHSAFSSSAKKYTRMAVESVTTEEQDGGITQMLVTFVGLTTSTGLPPPIIRLIPTAGEGVYGPPLVIEAEYVTDVSETEFMAGQLAQNNGARIATLFTQTIKMPAFINGTAMPRDPRSAFYSTPPSGIGGGLIVNYDGYCVLSMSCERRGLFLVARNTYHEVQQIASIS
Ga0208916_1000088421	F035669	GGA	MKEQQLNELQGTSILTKSFFNKLIRRIECTKPLAGSGITIKEQENGFEIASGNAGGVAGYSSITLNVCSNGVPAQILVLGYAVEEE
Ga0208916_1000088422	F026550	GAGG	MAQSLDIYIDTTNGNLVAAGSARNGTLPTLTRNDSYNLRVRLQERDSGGFLRDLDLTGSSIKLGIGGIDADPTDGQFKLVLNSVTSNAISFNATTTQLYNAISGIAGTGVGVTTYGNENYAY
Ga0208916_100008845	F003049	AGGA	MKNAKQIIGCRKSKKGENTKGLGMITFGKSSVDKTKYVLVDITYDDKAGKELYEAGMLALKHDPEAVIEYAIKKALTSMAKCKK
Ga0208916_100008847	F030060	N/A	MTKGVITSESPEIHWQHLKVAGGRVLDLGCAFWTETERQEANGTTKYFLSRKPEFYMGVDINQGDINTLSQQYPQGKFLCEKADSAFQMDTWITENSITHIKCDIEGDETQLLQIGNVHNLKEIAIELHYSDAWLKEFIAWFDSIGFECYRHDSVSFCAEISVIYGRLKC
Ga0208916_100008849	F008741	GAG	MSAKTIKYSQRLGDVLRCLPAAKHLADQGHEVFFDCFAQYHGVFELTSYVKAGHRMGDVIDLEVWPNQYEAYRKSKRSWTDFVYSHPEIKDADKTSIVLDKLDEKPAEGLPETYNLVAPFGLSQGYYRNPLELIVRARQTMGKDNFFVLCPAEIKIQGLNTYTAPSVEQMAKAIRGATDFWAINSTPIILASATRRDKQTGFFPQKDEWETDNIFSFEGMITMD