NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208916_10000790

Scaffold Ga0208916_10000790


Overview

Basic Information
Taxon OID3300025896 Open in IMG/M
Scaffold IDGa0208916_10000790 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14346
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003134Metagenome / Metatranscriptome505Y
F005697Metagenome / Metatranscriptome392Y
F024931Metagenome204N

Sequences

Protein IDFamilyRBSSequence
Ga0208916_1000079012F003134N/AMSNWTPVWKVEIDGVAYTTAVLANLSLTSGRTNIYEQAQAGFVNIQLLDVNQTAIPVSINSTISVEIKDTSGTYVPIFGGNVVDIGLEVRDVGSTMFTQTYTITALGALARLPKVLTNGVLPKEFDGDQIWDVLSQVLFGQWQQVAGALTWATYDPTITWANAENNGLGEIDRPGNYELAARSTNRTDVYSLVSALATSGLGYIYEDAYGRIGYADSTHRTNYLAANGYVDIDANHARARGLKIETRAGDVRNSLTIKYGATSSSEQSASDAASIAEFGTLAQIITTTLHNSADATAQANFYLSLRAQPEPIFKAMTFDLTNPDIDNADRDALINVFMGQPLAITNLPLNMASGAFQGFVEGWTFTASYNQLSLIVLLSPLAYSLQAMRWNDVPITEKWNTVSPTLNWESATIVA
Ga0208916_100007903F024931GGCGGMQLTRAEEIECLKAAIQFSIDGGNQANDAARYNTEIGFFDYIAEWAETIGSEWVVAKYLGVTYDPHEPKFKVKADVGNGIEVKWTKYVAGQLIVHEYDRTADIAVLVTGKSPHYFIAGWIPVAIAKKPRYRHSKQPNWWVTQINLQPIENLRKSTYGQTAI
Ga0208916_100007905F005697AGGCGGMGFLDNYEASRERLERWLSSFPLGRIETRIVEFSAEKGYVLVEAKAFRNYDDALPAGIDYAHGYVGAYQQNMKRWFVEDTVTSAIMRVQQLVMGGAERSTREIMEQVEKTPAKIANADKDHDYWTTKFGDVPSYKTAGEAEQAGIPSLGSSMDEIKKQLGGELVAEAPQCSHGHMIWKQSHDGAPKTWGGYFCTERTKATQCTPRWYVMRSTGKWEPQV

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