Scaffold Ga0208916_10000729

Overview

Basic Information

• Taxon OID: 3300025896
• Scaffold ID: Ga0208916_10000729
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14929
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (60.71%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005846	Metagenome	388	Y
F006138	Metagenome / Metatranscriptome	380	Y
F009142	Metagenome	322	Y
F011284	Metagenome	292	N
F012113	Metagenome / Metatranscriptome	283	Y
F012433	Metagenome / Metatranscriptome	280	N
F019290	Metagenome	230	Y
F027777	Metagenome / Metatranscriptome	193	N
F033350	Metagenome	177	N
F090073	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208916_1000072915	F012113	N/A	MEQILAFVQSQDVFAWLGALVALLSAVIAVASLIPGDEPEASLTKVVSFLSRFSRK
Ga0208916_1000072918	F011284	N/A	MTLEQGVEKTPKHFTKKHELHLTTLQVAAVESMEKKYKKGVEENQGTKLWEMPTARLIEEAIAEATDQMVYLLSLRQQMHIVMELARDGCTDETLTNPRARECCHLIYTTLTGQSKPPL
Ga0208916_1000072921	F005846	N/A	MTSLPLPARPVGSAVPANHDEFSDGFSIEGKLNGWRGWFDQETQQGYNRHGKFATNHKLMADRILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDLQANKLLRFVRLAHHKINSIWEEMNFQNNKAGEVIWEGFVMKALDDGKYPFITNPNYCSPAWQKQRIRW
Ga0208916_1000072923	F027777	AGGA	MNEELPTFWHQEPANKKLPNETTDEWVVRVFGAFPDTEFDSRNDFRFLNLPTTAKENAEGFGIFDYGQDKQ
Ga0208916_1000072926	F033350	GGAG	MSIDVDVPRVKWSMLEWKTIEEKPKNDEKVLMDIGGEVCVGRYVDGSFVSRSWGHSENDVRLWASWPKAPKW
Ga0208916_100007293	F009142	N/A	MSNSVQINVEDALEDLLVGISGLNVYKTNKVGAKLFPFATISASIGEQVLGNYTGVYEVAVTINYSDTAAKTTKEAFDAEYCSIFEAFYSETPPLFTKIQNNISGTKVYTARITGQTPTIRTAKRAWQRGLKMSLICTPQ
Ga0208916_100007295	F012433	GGA	MSADQVADLRERLARIEERQVGLISILERHTSEIAEWTGRMNGKVDTLERDAHTIKTKLWLVALVSGAVFSTIWELIKVRVFPR
Ga0208916_100007296	F006138	GAGG	MPATTVGNAGLVFGLSTETIGLVQSFSETRNVEKNEIRSATGDISAIGYYNPTTAYSLSVAITGANTSLTVGGAFASLANATTVGTCRIDSIAINKTNTGFVTIDISATGYPNVS
Ga0208916_100007297	F019290	N/A	MEGSSYWGTTNIKVASAVAAFGGTLRQTDPVTHIIRDDGSKQITFWFNSGGSGSTAKKEMEAKWSDMTSDQEAPIRYVRAALENRETLLGLVKRAEPIQIIKRGGQTLLVPTNAKPELKRAILKAI
Ga0208916_100007298	F090073	N/A	MSDILDEELSASFVQPHKSFKGEQIAEYTEGSRLLMLQCKDKNDSSVYFIWSFLYLHLLIHKNKREAIKLAWDKDAFRERVLDWVADKSDEDRDTATNIVSTIIEEASKARVSIVQSGLEGQSSGNE