Scaffold Ga0208916_10000545

Overview

Basic Information

• Taxon OID: 3300025896
• Scaffold ID: Ga0208916_10000545
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17592
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (81.08%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002826	Metagenome / Metatranscriptome	527	Y
F003304	Metagenome	494	N
F004010	Metagenome / Metatranscriptome	457	Y
F019450	Metagenome / Metatranscriptome	229	Y
F022371	Metagenome / Metatranscriptome	214	Y
F033721	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208916_1000054521	F002826	N/A	MQVEAKDRLKWAREILLIARNKLAVERNRATHGHAIDMIQIITMVDAASLVCKEVVGEE
Ga0208916_1000054522	F004010	AGGAGG	MPLGKDVSKNMSELARDNRRKGSERGAGGKPRSRQQMIAIALSAAGKSNKSPRKFRMRSG
Ga0208916_1000054526	F022371	AGGA	MFCLLDLAGVVWVIGWFVLYSSLTLSAIYCAGYLIFKLIEIIRKELDL
Ga0208916_1000054528	F003304	N/A	MKQALVTQSFGEDWQKIIDLTRPRMEAYCKRHSTDFILIDKPLTHPAQYSKSAIGNIMATKGYDQVTFVDADVLIANDCPKLSDDAGVFCAFDEGAYLDRKPDMVKLAGAFGGVIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLSNQIKADEAKLVELGR
Ga0208916_1000054529	F033721	GAGG	MRWIKKELDEDGKPEWAVYIDEAGEGNEEDWSHFDTYASRDEAVEACWKYTWEDYDCSDK
Ga0208916_100005457	F019450	AGGAGG	MANIKHYYAVYNSVGQFFARFTSYSNALRWAVRNGMEWSAIIRKERETQTK