Scaffold Ga0208916_10000529

Overview

Basic Information

• Taxon OID: 3300025896
• Scaffold ID: Ga0208916_10000529
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17758
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (74.36%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002009	Metagenome / Metatranscriptome	604	Y
F003304	Metagenome	494	N
F004010	Metagenome / Metatranscriptome	457	Y
F007467	Metagenome / Metatranscriptome	350	Y
F011649	Metagenome	288	Y
F020665	Metagenome / Metatranscriptome	222	Y
F022371	Metagenome / Metatranscriptome	214	Y
F033721	Metagenome / Metatranscriptome	176	Y
F037193	Metagenome / Metatranscriptome	168	Y
F039993	Metagenome / Metatranscriptome	162	Y
F090072	Metagenome / Metatranscriptome	108	N
F102823	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208916_1000052910	F039993	AGGA	MKLALSWIFYHIGNITSLTLMRLGHGYGFYNRMMIWSSALDKHGKIWKDVK
Ga0208916_1000052911	F003304	AGGA	MKQALVTQSFGEDWQKIIDLTRPRMEAYCKRHSCDFILIDKPLTHPAQYSKSAIGNIMATKGYSQVTFVDADVLIAADCPKLSEDAGVFCAFDEGAYLDRKPEMVKLAGAFGGMIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLTRLSNQIKADEAKLVELGR
Ga0208916_1000052913	F022371	AGGA	MFCLLDLAGVVWVIGWFVLYSSLTLSAVYCAGYLIFKLIEIIRKELDR
Ga0208916_1000052914	F020665	AGGA	MRKKNRKITLVKTLEQKAVRVMLDVDDDLYEALARAGRQHFAKDKMACFEYALNKALLELCEELK
Ga0208916_1000052917	F004010	AGGAGG	MPLGKDVSKNMSELARDNRKKGSKRGAGGKPRSREQMIAIALSAAGKSNKSPRKFRMRSG
Ga0208916_1000052919	F037193	GGTGG	MKSKDELAMQVKKEWDEKNLRWKLWLEAGGFRTEIFCYSSAEEEYSKCVRELVDHAYQMQSV
Ga0208916_1000052921	F102823	AGG	MSALYDWIIVGAGLAIGRLLVAIAVITVVTAILAVFFIIEEKTK
Ga0208916_100005293	F007467	N/A	VNEKEAWAKFEAGLKDMESFDEAVAWVKKNKKIVEKLTMMAMIRRFNEDISHANKTWRN
Ga0208916_1000052930	F090072	GGA	MGFKMNEDEIIKAYLSRLGKKGGSVKGPQKVRPKEHYQKAVNIRWAKYRERQTEAQASKR
Ga0208916_1000052937	F011649	N/A	MDEKSVTPDAPIEKAKNGREVFTEKIAEEIISACGSGFTLEKAGALVGVNPSTIRTWSQRKPDFGKRVETARKKHELSLLRDVQLAGEKSWQAKAWILERGYNWAQPSARLQVSQDVTHGISGNLAQLLAGIAGRKKAQVIECKDVTPKTLHTIRDNSYCATDGTQTIVTTTLEKSVKTRHRAMRRRKPRKESLAKYTTTPPANPPAPI
Ga0208916_100005297	F002009	AGGAG	MTAPTIQEMGNAAQEIVWRVMGKGSDKSAYGDWLVKDRPTHDYHIARAIRHLATAQMQLHKSSPCPDNNGETSVDHLERALVRSLFVLAQIKKEVTRL
Ga0208916_100005298	F033721	GAGG	MRWIKKELDEDGKPEWAVYIDEAGEGNEEDWSHFDTYPSRDEAVEACWKFTWEDYDCNDK