Basic Information | |
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Taxon OID | 3300025896 Open in IMG/M |
Scaffold ID | Ga0208916_10000221 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 29012 |
Total Scaffold Genes | 50 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (30.00%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.283 | Long. (o) | -75.3633 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000957 | Metagenome / Metatranscriptome | 821 | Y |
F001055 | Metagenome / Metatranscriptome | 791 | Y |
F001338 | Metagenome / Metatranscriptome | 719 | Y |
F002413 | Metagenome / Metatranscriptome | 561 | Y |
F003714 | Metagenome / Metatranscriptome | 472 | Y |
F006659 | Metagenome / Metatranscriptome | 367 | Y |
F014261 | Metagenome | 264 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208916_1000022127 | F001055 | N/A | MGTKSIRHIVEATLATYLSTQTGLTSVAFLTGDSAATQTLPKAVVLCESARSPNDLPEGEGNFSCSVRITLFSNADDTTLADHRARCAALSGNMRDLTSIKAAFVTSTDAACYDVTMQSEDEGIDERSWATSFSFDVLVVLPA |
Ga0208916_1000022142 | F014261 | N/A | MKSLIALTALIILGWTAVVTFAGPELYRAINGPEPVKAKAVRRHR |
Ga0208916_1000022143 | F003714 | N/A | MPNANHPYVDSLTFAGRPLPLKRPMAEYAARRLQAILPQIAALNAAGKTQADAAAALGTTVCSLRKWIEITGTQWVNLKKRGPYRRQK |
Ga0208916_1000022146 | F000957 | AGGAGG | VSSFRHLDGMLGLLSELYHINERIMTGDICSAKAAIESKRMEKLLNHYHEALSEDGACKISLQAYAAAGGWVGITYSYELDGFEVAGSQVPRRV |
Ga0208916_1000022150 | F006659 | N/A | MKKDPKLPAEYRIIADSSYIVLPDQKVARLLTPTVRNGVTYYNLFVPGYTRMSLADIEATINAGE |
Ga0208916_100002218 | F001338 | N/A | MTTDNNRVPLTSISTNGTYKLKLIKPKFEKVKQWEDGTTSCRLFFVDDKGFCLSKNFSSKYGKALAMLVGKFSGKYTNEIRLDATPAEYMQYLEPACGQTILVGVEVEANGEWQGKPQYKYKMTYPRGSQKPTAPEEPLPPEGVPF |
Ga0208916_100002219 | F002413 | N/A | MSAPTLVLIAGYARAGKDSLASGILEWSQRPAEHINFADALKEAANHYMDYLGLDGDFFKEDFKVDNRDFLVHAGKFARRMDRDVFARHFANWCPVMKHHDQPSPETVVCSDWRYVNELRVCQDILWEKGWKVRTIYVATAGVGPANDEELDSIAEIRASHLFDQEYIFRPSSRNAIMTEGRNLARLWKL |
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