NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208916_10000221

Scaffold Ga0208916_10000221


Overview

Basic Information
Taxon OID3300025896 Open in IMG/M
Scaffold IDGa0208916_10000221 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29012
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (30.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000957Metagenome / Metatranscriptome821Y
F001055Metagenome / Metatranscriptome791Y
F001338Metagenome / Metatranscriptome719Y
F002413Metagenome / Metatranscriptome561Y
F003714Metagenome / Metatranscriptome472Y
F006659Metagenome / Metatranscriptome367Y
F014261Metagenome264Y

Sequences

Protein IDFamilyRBSSequence
Ga0208916_1000022127F001055N/AMGTKSIRHIVEATLATYLSTQTGLTSVAFLTGDSAATQTLPKAVVLCESARSPNDLPEGEGNFSCSVRITLFSNADDTTLADHRARCAALSGNMRDLTSIKAAFVTSTDAACYDVTMQSEDEGIDERSWATSFSFDVLVVLPA
Ga0208916_1000022142F014261N/AMKSLIALTALIILGWTAVVTFAGPELYRAINGPEPVKAKAVRRHR
Ga0208916_1000022143F003714N/AMPNANHPYVDSLTFAGRPLPLKRPMAEYAARRLQAILPQIAALNAAGKTQADAAAALGTTVCSLRKWIEITGTQWVNLKKRGPYRRQK
Ga0208916_1000022146F000957AGGAGGVSSFRHLDGMLGLLSELYHINERIMTGDICSAKAAIESKRMEKLLNHYHEALSEDGACKISLQAYAAAGGWVGITYSYELDGFEVAGSQVPRRV
Ga0208916_1000022150F006659N/AMKKDPKLPAEYRIIADSSYIVLPDQKVARLLTPTVRNGVTYYNLFVPGYTRMSLADIEATINAGE
Ga0208916_100002218F001338N/AMTTDNNRVPLTSISTNGTYKLKLIKPKFEKVKQWEDGTTSCRLFFVDDKGFCLSKNFSSKYGKALAMLVGKFSGKYTNEIRLDATPAEYMQYLEPACGQTILVGVEVEANGEWQGKPQYKYKMTYPRGSQKPTAPEEPLPPEGVPF
Ga0208916_100002219F002413N/AMSAPTLVLIAGYARAGKDSLASGILEWSQRPAEHINFADALKEAANHYMDYLGLDGDFFKEDFKVDNRDFLVHAGKFARRMDRDVFARHFANWCPVMKHHDQPSPETVVCSDWRYVNELRVCQDILWEKGWKVRTIYVATAGVGPANDEELDSIAEIRASHLFDQEYIFRPSSRNAIMTEGRNLARLWKL

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