Scaffold Ga0208916_10000221

Overview

Basic Information

• Taxon OID: 3300025896
• Scaffold ID: Ga0208916_10000221
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29012
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (30.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F001055	Metagenome / Metatranscriptome	791	Y
F001338	Metagenome / Metatranscriptome	719	Y
F002413	Metagenome / Metatranscriptome	561	Y
F003714	Metagenome / Metatranscriptome	472	Y
F006659	Metagenome / Metatranscriptome	367	Y
F014261	Metagenome	264	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208916_1000022127	F001055	N/A	MGTKSIRHIVEATLATYLSTQTGLTSVAFLTGDSAATQTLPKAVVLCESARSPNDLPEGEGNFSCSVRITLFSNADDTTLADHRARCAALSGNMRDLTSIKAAFVTSTDAACYDVTMQSEDEGIDERSWATSFSFDVLVVLPA
Ga0208916_1000022142	F014261	N/A	MKSLIALTALIILGWTAVVTFAGPELYRAINGPEPVKAKAVRRHR
Ga0208916_1000022143	F003714	N/A	MPNANHPYVDSLTFAGRPLPLKRPMAEYAARRLQAILPQIAALNAAGKTQADAAAALGTTVCSLRKWIEITGTQWVNLKKRGPYRRQK
Ga0208916_1000022146	F000957	AGGAGG	VSSFRHLDGMLGLLSELYHINERIMTGDICSAKAAIESKRMEKLLNHYHEALSEDGACKISLQAYAAAGGWVGITYSYELDGFEVAGSQVPRRV
Ga0208916_1000022150	F006659	N/A	MKKDPKLPAEYRIIADSSYIVLPDQKVARLLTPTVRNGVTYYNLFVPGYTRMSLADIEATINAGE
Ga0208916_100002218	F001338	N/A	MTTDNNRVPLTSISTNGTYKLKLIKPKFEKVKQWEDGTTSCRLFFVDDKGFCLSKNFSSKYGKALAMLVGKFSGKYTNEIRLDATPAEYMQYLEPACGQTILVGVEVEANGEWQGKPQYKYKMTYPRGSQKPTAPEEPLPPEGVPF
Ga0208916_100002219	F002413	N/A	MSAPTLVLIAGYARAGKDSLASGILEWSQRPAEHINFADALKEAANHYMDYLGLDGDFFKEDFKVDNRDFLVHAGKFARRMDRDVFARHFANWCPVMKHHDQPSPETVVCSDWRYVNELRVCQDILWEKGWKVRTIYVATAGVGPANDEELDSIAEIRASHLFDQEYIFRPSSRNAIMTEGRNLARLWKL