Scaffold Ga0208916_10000121

Overview

Basic Information

• Taxon OID: 3300025896
• Scaffold ID: Ga0208916_10000121
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36912
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (69.49%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F006891	Metagenome	362	Y
F007747	Metagenome / Metatranscriptome	345	Y
F009066	Metagenome	323	Y
F026867	Metagenome	196	Y
F029043	Metagenome	189	Y
F031026	Metagenome	183	N
F042872	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208916_1000012110	F005502	AGG	MRALCNVVLTFLAFFGFPATQASNVMIDMRPDAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTTLRAGRHCAVDPDIIPLWSRIRVIGAKREWVAVDTGTAVKSKKASGGKLPVIDVFAASEKQFNAMRLPKVAMVEVMK
Ga0208916_1000012119	F042872	N/A	MQSIINQNKEGDRTVGSNPTPSDAYHYNDLRRNGNTAVITGPKKAHYQQLNLNSRGGYDLPPEAFVYHPNPAVFRMWAQQHEASK
Ga0208916_1000012121	F026867	GAG	MSLGRLNDIAMKLRQQNQALSLRQLGAAYGLGYVRIKQMQALPGFPQIAGKVIPSDFDQWRMIRTTGLSSLHRGDRLRSAAGKVHALKSTSDLRVAWRQIENSLKAAVSSLGLPEGNGSSDV
Ga0208916_1000012126	F009066	GGAG	VTPEHEKHLAGILRDLTRDLDAKYRKGQDEHGGALWRRPVWKDAWEEVLDLCTYVHTLKMQLSVIAEIALIGASDESVVAAQSRESCRQILAVLEGFPSAADKK
Ga0208916_1000012128	F031026	GAG	MRGGLNALLLISSLALASCATTSQTQDGPPPSPDSISYFIYEWDKAERTNKPCPQAYRDLFAKSLKALSDCLAEVERERARNQ
Ga0208916_1000012130	F006891	N/A	VSADQVAELSERLALVRESIARIETRQSVILDLLERSQASLGEYHGRLTNMERDAHTIKTKLWLLALVSGAVVSTAWELIKRRFSL
Ga0208916_1000012131	F029043	GGGGG	MSKDEQACQALQYLLDEGFIALGYIDGKPAVHLTTSLADAQKAILKLVSNDSADWWK
Ga0208916_100001214	F007747	GGAGG	MKDLGKITFGKARLAPKQVLVDVTYDAKTAKALHAFGLKQLKKDQEAVIEYVIKKALEGLVKK