Scaffold Ga0208916_10000083

Overview

Basic Information

• Taxon OID: 3300025896
• Scaffold ID: Ga0208916_10000083
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40877
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (96.43%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011388	Metagenome	291	Y
F026257	Metagenome	198	Y
F036683	Metagenome	169	N
F048282	Metagenome / Metatranscriptome	148	N
F090332	Metagenome	108	N
F096925	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208916_1000008314	F011388	GAGG	LKQLTNDVAIDLARGREDIEFFALRWLGIQGNPGQVAWWKACSERDATGYRPRYITTVVSAGNRAGKTLAMAVVCLHHALYKLGLANPQAGDPDSYRKWLDTPYEWYHVGIQQETAELVFREIETILSGAHPAQRGRGCAIIKELGKVVDTQKKYRGEYAWVKFNPMVGGASIHFRTTQDRAKALLGKDMNGVSFDEAAFEPHLVMIYQEVLNLRRLSTGGPLHFIGTPSEGINDYAELWERGNPENPAKDEKFISFRLSTRDNIGYGLTQDNFDDVVRQQAAYLIPQNIDGFFIESRDAFFWSQSVLASYKVLEDDLKPTKSHRYVQGVDPGISHDATWAITLDITERGKLRGVRVRKRGGKQSISAVVNMVREGHLLYSQDGAFCTTIVDSTGLGGRLFQQEFSMIRPLRGFDFGGTKSKKVELLNDLKAVIDKGQIEFPMGGPWDELKRQLLIYKLDDKKLEQDAVMALAIAVRHALRNPEKGLENPTFTYYGASD
Ga0208916_1000008320	F096925	AGGAG	MQLKVRSQLDHVEAGGVLDDCGPSSAACASSWVLGKEITAGEGIAAKEKATGFKEKQGVSDNGSSLWDLIKTCKVLGANARYPRDWDDCVESLKKGAALIINVDAAKNYPPQAISAWHKRYIGRHAGATYGHMTAAAWSEEQGFQFADPTFTGKGKEKFAVTVTDKELKAIASSKGDAPFKRCIIVKK
Ga0208916_1000008321	F026257	N/A	MTELAPVLTGCHVCRSPLVETINKKMRDQVPDQRISEWLEENAQYISRITLGKHKREHLTEPHERLRQQAVKVMQKQQKTIKGSGDLAGLVRDYVHSAVEEGLMTPTLAEGLRAQEMIDRRQEKGADREIALTLAGILGGVATYQLLEATEIKETPDAIEG
Ga0208916_1000008327	F048282	AGGGGG	MPTAVTEYVNRCARLMGLGHWELTVSKEAASEDAWADIEVSQNLYKATIRFSPDIWKEKATEIRRVVAHELIHCHYAGVERLVDTLEKPLGSAAFEILSHVWDVESERGADSLSTVVAQLLPLPTFGEK
Ga0208916_1000008351	F090332	N/A	VIDDDLDIVQNGDICYLLDGRYGRIWAGLSVRYDSGVAPEGWFFLRETIENRVLNKELIAAAIIELGDKVEVGRRTVQLARVKRG
Ga0208916_100000837	F036683	GGA	MAGETLSALRTSVRSDLRDPNGATWSDTEVNDLINSGIDWVNGFYPKEAIQTTAVTQPISGAVNSIALTTVSWPFRVDVYDSSGQYRESLLPSSGDGPDSGWELHNNILFFPPHYSLVSPATLKIFGYSGFVQLSTSTATTDMDVSAISSVRVWAQAEAFNRLLSDRVAFQQWQVQSGNSDVSALSMNQIALSNQARVRREEARLRRIRRIG