Basic Information | |
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Taxon OID | 3300025895 Open in IMG/M |
Scaffold ID | Ga0209567_10021656 Open in IMG/M |
Source Dataset Name | Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - COGITO 998_met_12 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2939 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium SEEP-SAG9 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Helgoland, North Sea, Atlantic Ocean | |||||||
Coordinates | Lat. (o) | 53.9944 | Long. (o) | 6.8905 | Alt. (m) | Depth (m) | 29 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F042909 | Metagenome | 157 | Y |
F093888 | Metagenome / Metatranscriptome | 106 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209567_100216561 | F042909 | AGGA | MAELLTFIGNLNLGTFIVIWTSTIFIVIYISLLLLSVSQMNKETKKIRKKVGILMQRLSEKIEA |
Ga0209567_100216562 | F093888 | N/A | LKVMIILFFKQLSNETGLPLMVSIFAFVVIFSLALFGILILLKVRSIKKGLNNLNDRLDIISQGFGLQSGEFENLSPYKFNLGSQLKDNLAADDRTNSETNTTPDLADKNGSEERRINMEISKKIHALLKKSGKPTPYHDLTKHLSKDYPGYNYDFFLKEVEDLQKEGKVEVQLIAGKLYFQIKKT |
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