Scaffold Ga0209335_10090459

Overview

Basic Information

• Taxon OID: 3300025894
• Scaffold ID: Ga0209335_10090459
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_09 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1642
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005578	Metagenome / Metatranscriptome	396	Y
F011629	Metagenome / Metatranscriptome	289	N
F081202	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209335_100904592	F081202	GAGG	MQNKQIFNATTEDRYTVIATHYTGETMDGCAMFDCVIFDTHEGDVYVQENCMCMDCALLQTEGVTECITYKEYKKEVAL
Ga0209335_100904593	F005578	GGAGG	MQKNISTRELKHLCNFLTHEMNYKVELVSDEDFDYDEEDCDNCYNWVSATEELCMRTQCVLDNYFTHKDETLATAFETAINYRYDDDCINEGISEHFFDYCKKHNILEFYFKQADAHDYDGEDACMRMYK
Ga0209335_100904594	F011629	GAGG	MLNTTQVKDLVKQRFGGSLKQVYLNKCYNNKEEIADRRNMAFAVDGDVYTNVDLTALAKEIGCKRIKLHAACLRGMQ