NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209630_10097683

Scaffold Ga0209630_10097683


Overview

Basic Information
Taxon OID3300025892 Open in IMG/M
Scaffold IDGa0209630_10097683 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_01 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1593
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013135Metagenome274Y
F073440Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0209630_100976831F013135AGAAGGMADVQLSEEAIEFEKQFEESTKKVEPVNSGLITNPDEEDFNFWNKAGSLTLSAGQGVVNAVEEQGDFLDENIVSLGGLEFGDEDGKFTFKDLIPKYVSPKKWKEGGYSQKRNLPVFHKPEGIGENLTEGAARFVTGFIG
Ga0209630_100976832F073440N/AEDESINNWKTTFTPLINQKLSTVKNRRVKKLIESSIDLENSESIYHLKQNSFKAYEKESVKLYNDDVNADVAKFKSETNPKLKDKYRDQLYLKAELFNEEHMLGSNDLKKRKEAIDSVLLLTDADSFIGTPDAVEKIKQIDKDINGTKFLSDEIFNNSIYNSYVQKIQSVAVKGDPNADYEEAERLLNELENFERYNGSKTISGKREAQFATLKQNILTESISHDSFVRKIEQGNKFFEYQTEQQKLLESNFFNSMIPTLNKAINKERAVEASLEYGERIDLYVQSNPDASYNEQQQYARQLRIDLYDKYQDVKTEQITAFNLEENKFNVIRETNVIIEAKNNYIADPKAKNILITMSRLNGYVDEQGNPQPIKFYNDYIKILKSRQEG
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