Scaffold Ga0209630_10092421

Overview

Basic Information

• Taxon OID: 3300025892
• Scaffold ID: Ga0209630_10092421
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_01 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1655
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004856	Metagenome / Metatranscriptome	421	Y
F051470	Metagenome	144	N
F068823	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209630_100924212	F051470	AGGAGG	MSTDNKWIHDYYDERWQHYYDVLTKDIKDIGQVETIADRLAMEDVYNLNMEG
Ga0209630_100924214	F068823	AGGAGG	MSRTYNEYYFEKLDVMDKLDEIGLLTRLLRIVYKEQGLDTIRYLVCNKTNRKFIWFNDDMMTDIINDIEEGVSYEN
Ga0209630_100924216	F004856	GAGG	MSDWIEGTKPKYIEARYNAYLTWDLDEEGIDWDKVKDWDISRMTLTIDFKDGTSQSYEAWDVGEIDFKHGMEEVLVLDEDWSRVEGLN