Scaffold Ga0209630_10063166

Overview

Basic Information

• Taxon OID: 3300025892
• Scaffold ID: Ga0209630_10063166
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_01 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2142
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001611	Metagenome / Metatranscriptome	663	N
F007750	Metagenome	345	Y
F021299	Metagenome / Metatranscriptome	219	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209630_100631662	F001611	AGGAG	MPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRVSSAVDTAGTSATADTFLNVSVNNAEYSKDVSVPALVTGQPFGVLNGSYLNNDLLTTGSQRNRVLVRFTNDTAATRTIRCGVFIG
Ga0209630_100631663	F007750	AGGAGG	LAFLGDFGKFFGLGSSEEVLGQAGQSVGSLFGPEYAIAGRELGKATGRATSNLAGDDNISPLSTADQAREQSAVPVSVIGNRPQETSTMTGTTGMVTQAGFGFLPQLATGVGRFLTSKSGQIATGVGTAVGLGSSQFMGMNGREKPVLTQSRRNKAKVRQLVNFMGIEGTANFLSQSIGQNVSPNDVVALLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEATSMSRTTRRAPVRRTASTTLIKN
Ga0209630_100631664	F021299	N/A	NSVKGLEWDTVATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLHYAIKQQNGAMHPPTDKLGG