Scaffold Ga0209630_10000932

Overview

Basic Information

• Taxon OID: 3300025892
• Scaffold ID: Ga0209630_10000932
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_01 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32907
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (17.24%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025412	Metagenome	202	Y
F027524	Metagenome	194	N
F028650	Metagenome	191	N
F076111	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209630_1000093211	F025412	N/A	MDYRKLKWGALKSYATKLGINTKGMTKVILLEWLDAMPDVAHGIEELTPFTGIKQEHPLFEEIKDYLPYLKAYKKLHAISPVPEVNKAIAALFLKYIEEDKNIRLNLGCGICKQRYYERMIAGYNRLVDEYGGGERI
Ga0209630_1000093213	F027524	N/A	VNEAFLKEKQQVIETACKNICKHSDIWKDLAQEVNIYFLTNELPSNLNKIDGFIFVVAYKMFHLSGSEFNRLHFDNVLQESTELDYLKLKDIPYISNNVYKEYLEQVKQLDEMERIWVEEIVKRNLSIKLFSDHTGIHRTTAKERMESIYNKIRNNNK
Ga0209630_100009322	F028650	N/A	MRIPKSLKEVLVKDYIQINKIRSAEYDNPFTRTIDLLCIFNDRKDVLKCKPSELAIDLNHLLVEPSRTLKQYFTINGKRYGIVNHINDLEAGQYMSFTTYLKGFADNPNVHIEQMPDILASVIFPVDKNNKVMAIEPSYFRNLADDIRNTMSIEDAFPICVFFCLLSANLRQTTQDFLNTKLESMTEESREAILEVAKDLEKDGVGLPPSITSAMETLQKDHITKK
Ga0209630_1000093222	F076111	N/A	MTLEQLTTKLELNILIERVLEKNGAYKQPLSKEEALKGLTLSEDAKSTLNTLKSALEQINKLYDLSIMYSKELKNKDSQIYKLSVENSKLRTRANLADQRTNNITDYIELHKNKTT