Scaffold Ga0209631_10108152

Overview

Basic Information

• Taxon OID: 3300025890
• Scaffold ID: Ga0209631_10108152
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1585
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004537	Metagenome / Metatranscriptome	434	Y
F016399	Metagenome / Metatranscriptome	247	Y
F032859	Metagenome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209631_101081522	F032859	GAGG	MSFGGGGSGGSSTVAAHTHNSALSGDGGALSSSLTQIDTSNLFSRIIVGA
Ga0209631_101081523	F004537	AGGTGG	MAFFSKPAINNFQVNSGNTPLLYPVRVICPANVTTGISFPDQFLGRAISLKISNNDSANAASYDYNLNGQFQNLAASNFATVDNTIVNYLTIIAGAAGTTLVEAQVIPATRDQIPIEVEV
Ga0209631_101081525	F016399	N/A	KRITKTIKRRSAPRKTMARRRTITRRISRKGRGIGSSLKTGVIGDVVKGIGAGSLVSLVMSRVAPNSSITPIASTGAAFLTGGIVGGAANLILSGGLSLGGIFGGSASAPVQEMSV