Scaffold Ga0209631_10104005

Overview

Basic Information

• Taxon OID: 3300025890
• Scaffold ID: Ga0209631_10104005
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1629
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018478	Metagenome	235	Y
F025412	Metagenome	202	Y
F099320	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209631_101040052	F018478	AGG	MVKDYKEMDWSKEYTYKEQKIYISYETKKYILCSFYENGKGIFKLDKTEFHG
Ga0209631_101040054	F099320	N/A	MEQENVYSYCLEVHEDGNLYMVTEYMNGYITIWAANATIEADGEVYFINLYED
Ga0209631_101040055	F025412	N/A	MDYRKLKWGALKSYATKLGINTKGMTKVVLLEWLDAMPDVAHGIEELTPFTGIKQEHPLFEEIKDYLPYLKAYKKLNAISRDPKINKAIATLFLKYIEEDKNIRLNLGCGICKQRYYQRMIAGYNKLVDKYGAGERI