Scaffold Ga0209631_10078187

Overview

Basic Information

• Taxon OID: 3300025890
• Scaffold ID: Ga0209631_10078187
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1986
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014147	Metagenome / Metatranscriptome	265	N
F065800	Metagenome / Metatranscriptome	127	N
F104988	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209631_100781872	F104988	N/A	MFHEVIDPDFAFIDECETIADYIEEHLYDTLLWQLPIEDEDIYQRTEDIDNYNEVHATAMNQVIAILASRFFYKTNTNSER
Ga0209631_100781873	F014147	N/A	MTTIKNTFEQQLHQKFGVNVMSTMGTSSAILADGGNGTDYLDYYDTNAGWIFGVHPRLQAFIDAHGWECEWQNSEVLNLYPGHDWTSDFSEEQLVSHWNAMCDYITAPLDHIYLNDDEAFEMLQLTIRQTVAASKNDRYNFDDKWLTLDGYSNPMSFNSLLNYIDVPELEEYLIAHALI
Ga0209631_100781875	F065800	N/A	METKFIPTNPEKLTGFDSILKEFNTINDSAYVFNDHYSSNYDVYVGEESTADGYSIWVINVDGEGPILSENVYYYQPSAYDIFNHLGGGWRDDLVVYTEIDLREIEEYM