Scaffold Ga0209631_10029407

Overview

Basic Information

• Taxon OID: 3300025890
• Scaffold ID: Ga0209631_10029407
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4046
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029593	Metagenome	188	N
F076603	Metagenome	118	N
F077802	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209631_1002940712	F077802	AGGAG	MTTELYPTDYVIVDSDTKNPIEGYEHIYHYTSVIDHFNEILTDKNEGWEYVSMSELSDEDKKNYKKTIKEMEEFRNELNXIRKTDXKE
Ga0209631_100294072	F029593	GGAGG	MVNVSRIFFRLQRVADLGKSQFWAMDRATRPPSNKNRSEVKGARSKKKETPLHALYRKCQAIWDFSHFILFPFIGDFSSIKSGIPFKRMNKSGKPLLTLFSIFWKKEFLGSAFFISFASVFSVDICYGKN
Ga0209631_100294078	F076603	AGGAG	MIQELNQQLKSMYLEPRSKLRVDVDYVVNRIESMVNVATDYEIESESQVDGYDYLVKDIEDFLNELKENMENHNGN