Scaffold Ga0209631_10017384

Overview

Basic Information

• Taxon OID: 3300025890
• Scaffold ID: Ga0209631_10017384
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5922
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008236	Metagenome / Metatranscriptome	336	Y
F050996	Metagenome	144	Y
F052546	Metagenome	142	Y
F060890	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209631_100173841	F050996	GGAGG	MKRPTKKAFYEFMSKRFKEKYKDNQGYLTLLDLIQEADKSDESFMDLVEITMMNHTDRLIYRNKQACLGIEMTPAQVNEYISIVEYALEYVS
Ga0209631_1001738416	F008236	N/A	AAGFELFAWCDSDEKIATKRPRGKKKADQWRSDLPKLVVLGDDKYVTCPEIRRGRGVVTCTKSKNSVNCQLCVQGLANVLFPSH
Ga0209631_100173847	F060890	GAGG	MIESMKLTKHDYEMIADILDAHYEETVELQKNHYLNDDTDYFKQLEYLEELIDKTVYMIGVRSAEEE
Ga0209631_100173849	F052546	GGA	MKNKILALRIVRPTPMIVKFYNTAAILILSTILSSGCTIIPNRNTLTLNKTIELDERAIEKLNVGVRLEWIR