Scaffold Ga0209631_10014659

Overview

Basic Information

• Taxon OID: 3300025890
• Scaffold ID: Ga0209631_10014659
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6722
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005590	Metagenome / Metatranscriptome	395	N
F005843	Metagenome / Metatranscriptome	388	Y
F010322	Metagenome / Metatranscriptome	305	N
F020173	Metagenome	225	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209631_1001465910	F005590	GGAGG	MTEKLTPLERWKELAIIENARMKRRLIGRDDMHAYAHKPWPLEKLRKEIKRCLSRHGELSVGDLCSMIDQDAVHIDVGLRTMRERRTIVKTSFIEGQQLYRLRTQEEFAF
Ga0209631_1001465913	F010322	GGA	MAWTCSVDDDFTLTPEQHAEMSAIASNTMSEANALMRDMMAITERTELPDLAKVYALGAALQSVIGHMRENDCDVQDAIAMTMGIIFETYSTPDKEDMH
Ga0209631_100146593	F020173	GGA	MICTTCDGTGFIELPRFVNTPDSDAWTTVRCPECQDEDDFDWRNEKEEE
Ga0209631_100146596	F005843	AGGTGG	MNLAEPVFMAFAVFSSVDECKAFAKYYDLARIFEPQCVEMGGEADYRRPWPDVRPQPRPTQESNNG