Scaffold Ga0209631_10006796

Overview

Basic Information

• Taxon OID: 3300025890
• Scaffold ID: Ga0209631_10006796
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11680
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015345	Metagenome / Metatranscriptome	255	Y
F023365	Metagenome	210	Y
F050009	Metagenome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209631_100067961	F015345	N/A	DSTPNDRTKFRKIEAGSPSPKAIQEPPLPRLWVTSDDVVANVSEVAVVGNNAHLGEEYDIRLKLLFVVEAKDGQKTEEDIDDFTKSIIEKLDTNYDLRAVGGAESTRLAEASHVTQIMDLPTMFRGDRVKGRVIKFRVIVRT
Ga0209631_1000679618	F050009	AGGAG	MPRGKQSGIAYGQKKQYGQSDTAQLIAIASYLRKKYKVKVKREAYLIFNIDNKLIKIKDYVTKADLNDCTAKNPDLTWIDKYGMWIIEVDGAVHDRKVEKTMQRNKLFRSNNIKLIVVNLAELKELELDIYDYIDSEILRLIKNE
Ga0209631_100067963	F023365	N/A	MANLGEITEIVNASELTLEVGADNYILLTNLSLHIGRPEDRVATTDGGALFTYGKGDNYFTATLLVSTPELGDATGSLNDLTKIDSDGDMTSTAWKIVAKNVSGATKTFAATGILREYDISKPSEGKVSIDIFVRITGDDITITPT