Scaffold Ga0208644_1158286

Overview

Basic Information

• Taxon OID: 3300025889
• Scaffold ID: Ga0208644_1158286
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1030
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F063076	Metagenome / Metatranscriptome	130	Y
F087206	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208644_11582861	F063076	N/A	IYINRKDDFGNLETVDQFNQGRKYAKEMLKEYRLSDPSAYYYMSQRPCKDWQLEAVQQ
Ga0208644_11582865	F087206	AGGA	MSNHYNEQHNEQELENIQSYVLEQDRKGLIDNEIDYMAFAHGLHPDDDRDEILEYIAESIFYEQTIG