Scaffold Ga0208644_1119909

Overview

Basic Information

• Taxon OID: 3300025889
• Scaffold ID: Ga0208644_1119909
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1258
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Flammeovirgaceae → unclassified Flammeovirgaceae → Flammeovirgaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029747	Metagenome / Metatranscriptome	187	Y
F038235	Metagenome	166	N
F039047	Metagenome / Metatranscriptome	164	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208644_11199091	F038235	N/A	MIREIFAPFERVTYRREDGNKAVYKVFRPTKHLFINKKKDNGNVVGFRAWKMPDTGADERMGWRSFRFDRIENRKLTFI
Ga0208644_11199092	F029747	N/A	MKYELALETVNCDSFTTFPHTREGLTAAFVRISEERVKEGFQSARIVSDRDGEVFALDMTVASV
Ga0208644_11199093	F039047	N/A	MKIKTEIDINDIVALKVALGNAERRIHELMNDKPDWRRLYEFDKDSVEKAKKVVAKLVAN