Scaffold Ga0208644_1020850

Overview

Basic Information

• Taxon OID: 3300025889
• Scaffold ID: Ga0208644_1020850
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4130
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017633	Metagenome	239	Y
F049501	Metagenome	146	Y
F057323	Metagenome	136	N
F068778	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208644_10208501	F049501	N/A	EEEEMHVKLGLEMEDTTHDMLVKWGKEVASDEDYINIAITAGLKHLISSDK
Ga0208644_102085010	F057323	N/A	MKILVLTIRAHGEEDDIYVFDNREVNILPTIKEWLKENDIKLTLPDHVTDTYSFMDWFYDAENSLEIGTDFFVNLQYKELLSE
Ga0208644_102085012	F017633	N/A	MQSDNNLTDQFLDMNDLDNDHIRALIQHYLSVRDKLPDNLTVRDRIEELQAELINRSSTIEGMIRQSTENPL
Ga0208644_10208509	F068778	N/A	MNKMNYLLGNQKIVDWGVFAEVEDSTDPELTQQIELVLPDHIQQEIYKLITDNIDQAKAIEAMAQF